JMF R utility functions

Installation

Install the latest release from GitHub using pak:

pak::pak("jmf-vienna/jmf-r@*release")

Or install the development version:

pak::pak("jmf-vienna/jmf-r")

Usage

Reduce verbosity

library(jmf)
quiet()
library(tidyverse)

Utils

Stable combined unique() and sort():

x <- c(
  "a", "vector", "of", "strings",
  "and", "some", "letters", ":", NA,
  "a", "b", "c", "and", "A", "B", "C"
)

x |> uniques()
#>  [1] ":"       "A"       "B"       "C"       "a"       "and"     "b"      
#>  [8] "c"       "letters" "of"      "some"    "strings" "vector"  NA

Shortcuts

• available (i.e., not NA): a()
• not available (i.e., NA): na()

starwars |>
  select(name, birth_year, hair_color) |>
  filter(a(birth_year), na(hair_color))
#> # A tibble: 4 × 3
#>   name                  birth_year hair_color
#>   <chr>                      <dbl> <chr>     
#> 1 C-3PO                        112 <NA>      
#> 2 R2-D2                         33 <NA>      
#> 3 Greedo                        44 <NA>      
#> 4 Jabba Desilijic Tiure        600 <NA>

Validation of JMF IDs

# valid JMF project ID:
is_jmf_project_id("JMF-2401-42")
#> [1] TRUE

# this is a JMF sample ID:
is_jmf_project_id("JMF-2401-42-0001")
#> [1] FALSE

jmf_project_id_regex(internal = "allow")
#> JMF-(?:(?:19(?:01|02|03|04|05|06|07|08|09|10|11|12|DM)-[1-9A-Z])|(?:20(?:01|02|03|04|05|06|07|08|09|10|11|12)-[1-9A-Z])|(?:(?:(?:2[1-9])|(?:[3-9][0-9]))(?:01|02|03|04|05|06|07|08|09|10|11|12)-(?:(?:0[1-9])|(?:[1-9][0-9])))|(?:(?:19NC|19PC|CTRL)-[1-9A-Z]))